GWAS-related eQTLs across different cancer types
We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).
|
Cancer type
|
eQTL type
|
tagSNP
|
Gene position (hg19)
|
p-value
|
|||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| THCA | cis | rs12196860 | 1 | rs62411456 | chr6:55968420 | COL21A1 | chr6:55921389-56258892:- | -0.63 | -7.84 | 2.89E-14 | Psychosis (atypical) |
| THCA | cis | rs12196860 | 1 | rs62411457 | chr6:55968487 | COL21A1 | chr6:55921389-56258892:- | -0.65 | -8.07 | 5.8E-15 | Psychosis (atypical) |
| THCA | cis | rs12196860 | 1 | rs62412799 | chr6:55977839 | COL21A1 | chr6:55921389-56258892:- | -0.67 | -8.31 | 1.01E-15 | Psychosis (atypical) |
| THCA | cis | rs12196860 | 1 | rs62412803 | chr6:55986547 | COL21A1 | chr6:55921389-56258892:- | -0.67 | -8.37 | 6.49E-16 | Psychosis (atypical) |
| THCA | cis | rs12196860 | 1 | rs62412804 | chr6:55986975 | COL21A1 | chr6:55921389-56258892:- | -0.65 | -7.76 | 5.03E-14 | Psychosis (atypical) |
| THCA | cis | rs12196860 | 1 | rs62412805 | chr6:55986986 | COL21A1 | chr6:55921389-56258892:- | -0.65 | -7.82 | 3.44E-14 | Psychosis (atypical) |
| THCA | cis | rs12196860 | 1 | rs62412806 | chr6:55987105 | COL21A1 | chr6:55921389-56258892:- | -0.67 | -8.28 | 1.22E-15 | Psychosis (atypical) |
| THCA | cis | rs12196860 | 1 | rs62412807 | chr6:55987693 | COL21A1 | chr6:55921389-56258892:- | -0.67 | -8.28 | 1.22E-15 | Psychosis (atypical) |
| THCA | cis | rs12196860 | 1 | rs62412808 | chr6:55987806 | COL21A1 | chr6:55921389-56258892:- | -0.67 | -8.28 | 1.22E-15 | Psychosis (atypical) |
| THCA | cis | rs12196860 | 1 | rs62412809 | chr6:55987863 | COL21A1 | chr6:55921389-56258892:- | -0.67 | -8.28 | 1.22E-15 | Psychosis (atypical) |
| THCA | cis | rs12196860 | 1 | rs62412810 | chr6:55988047 | COL21A1 | chr6:55921389-56258892:- | -0.67 | -8.28 | 1.22E-15 | Psychosis (atypical) |
| THCA | cis | rs12196860 | 1 | rs62412811 | chr6:55988062 | COL21A1 | chr6:55921389-56258892:- | -0.67 | -8.28 | 1.22E-15 | Psychosis (atypical) |
| THCA | cis | rs12196860 | 1 | rs62412813 | chr6:55988257 | COL21A1 | chr6:55921389-56258892:- | -0.67 | -8.28 | 1.22E-15 | Psychosis (atypical) |
| THCA | cis | rs12196860 | 1 | rs62412814 | chr6:55988296 | COL21A1 | chr6:55921389-56258892:- | -0.65 | -8.07 | 5.69E-15 | Psychosis (atypical) |
| THCA | cis | rs12196860 | 1 | rs62412818 | chr6:55989784 | COL21A1 | chr6:55921389-56258892:- | -0.64 | -7.96 | 1.24E-14 | Psychosis (atypical) |